iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q676U5|A16L1_HUMAN Autophagy-related protein 16-1 OS=Homo sapiens GN=ATG16L1 PE=1 SV=2

{"length":"607","regions":[{
startStyle: "curved", endStyle: "curved",
start: 13, end: 207, text: "Pfam:ATG16", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:ATG16",
description: "Pfam:ATG16", start: 13, end: 207}
},
{
startStyle: "straight", endStyle: "straight",
start: 237, end: 246, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 237, end: 246}
},
{
startStyle: "curved", endStyle: "curved",
start: 311, end: 350, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 311, end: 350}
},
{
startStyle: "curved", endStyle: "curved",
start: 355, end: 394, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 355, end: 394}
},
{
startStyle: "curved", endStyle: "curved",
start: 397, end: 436, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 397, end: 436}
},
{
startStyle: "curved", endStyle: "curved",
start: 439, end: 475, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 439, end: 475}
},
{
startStyle: "curved", endStyle: "curved",
start: 478, end: 516, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 478, end: 516}
},
{
startStyle: "curved", endStyle: "curved",
start: 519, end: 562, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 519, end: 562}
},
{
startStyle: "curved", endStyle: "curved",
start: 565, end: 605, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 565, end: 605}
},
{
startStyle: "straight", endStyle: "straight",
start: 164, end: 169, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:DEYDAL", start: 164, end: 169}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	164	169	DEYDAL	16 (3.0e-02)			Yes

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR01	34	44	hidden
ANCHOR02	48	54	hidden
ANCHOR03	106	113	hidden
ANCHOR04	131	137	hidden
ANCHOR05	146	152	hidden
ANCHOR06	167	176	hidden
ANCHOR07	223	228	hidden
ANCHOR08	239	245	hidden
ANCHOR09	259	264	hidden
ANCHOR10	271	288	hidden
ANCHOR11	312	319	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
Pfam:ATG16	13	207	4.2e-66	PFAM	visible\|OK
low_complexity_region	20	30	0	INTRINSIC	hidden\|overlap
coiled_coil_region	79	230	0	INTRINSIC	hidden\|overlap
low_complexity_region	237	246	0	INTRINSIC	visible\|OK
SMART:WD40	311	350	4.0e-09	SMART	visible\|OK
Pfam:WD40	312	350	3.3e-11	PFAM	hidden\|overlap
internal_repeat_2	323	413	9.6e-07	PROSPERO	hidden\|overlap
internal_repeat_1	339	437	9.9e-08	PROSPERO	hidden\|overlap
SMART:WD40	355	394	0.0158402605879156	SMART	visible\|OK
Pfam:WD40	356	394	7.7e-05	PFAM	hidden\|overlap
SMART:WD40	397	436	1.1e-08	SMART	visible\|OK
Pfam:WD40	399	436	6.5e-10	PFAM	hidden\|overlap
SMART:WD40	439	475	3.69762261489482	SMART	visible\|OK
Pfam:WD40	440	475	0.015	PFAM	hidden\|overlap
internal_repeat_1	464	563	9.9e-08	PROSPERO	hidden\|overlap
SMART:WD40	478	516	0.716010805056657	SMART	visible\|OK
Pfam:WD40	488	516	0.0045	PFAM	hidden\|overlap
internal_repeat_2	489	573	9.6e-07	PROSPERO	hidden\|overlap
SMART:WD40	519	562	0.0169771708410025	SMART	visible\|OK
Pfam:WD40	532	562	3.4e-05	PFAM	hidden\|overlap
SMART:WD40	565	605	0.00014215377162165	SMART	visible\|OK
Pfam:WD40	566	605	8.0e-06	PFAM	hidden\|overlap