iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q8NI08|NCOA7_HUMAN Nuclear receptor coactivator 7 OS=Homo sapiens GN=NCOA7 PE=1 SV=2

{"length":"942","regions":[{
startStyle: "straight", endStyle: "straight",
start: 3, end: 30, text: "CC", colour: "#9cff00",
"metadata":{ database: "INTRINSIC", type: "coiled_coil_region",
description: "CC", start: 3, end: 30}
},
{
startStyle: "curved", endStyle: "curved",
start: 115, end: 158, text: "LysM", colour: "#ff8800",
"metadata":{ database: "SMART", type: "LysM",
description: "LysM", start: 115, end: 158}
},
{
startStyle: "straight", endStyle: "straight",
start: 162, end: 183, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 162, end: 183}
},
{
startStyle: "curved", endStyle: "curved",
start: 197, end: 282, text: "Pfam:GRAM", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:GRAM",
description: "Pfam:GRAM", start: 197, end: 282}
},
{
startStyle: "curved", endStyle: "curved",
start: 780, end: 942, text: "TLDc", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TLDc",
description: "TLDc", start: 780, end: 942}
},
{
startStyle: "straight", endStyle: "straight",
start: 185, end: 190, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:AEYDKL", start: 185, end: 190}
},
{
startStyle: "straight", endStyle: "straight",
start: 308, end: 313, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:GEWEDL", start: 308, end: 313}
},
{
startStyle: "straight", endStyle: "straight",
start: 414, end: 419, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:DDFVDL", start: 414, end: 419}
},
{
startStyle: "straight", endStyle: "straight",
start: 745, end: 750, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:KSWEII", start: 745, end: 750}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	Anchor
xLIR	185	190	AEYDKL	13 (7.9e-02)		No
xLIR	308	313	GEWEDL	19 (1.2e-02)	Atg3_YEAST 268-273 (5) TBCD5_HUMAN 57-62 (4)	No
xLIR	414	419	DDFVDL	18 (1.6e-02)	ATG13_HUMAN 442-447 (4) Q8MQJ7_DROME 389-394 (4) ULK1_HUMAN 355-360 (4) ULK2_HUMAN 351-356 (4)	Yes
xLIR	745	750	KSWEII	19 (1.2e-02)		No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR01	11	22	hidden
ANCHOR02	48	61	hidden
ANCHOR03	80	91	hidden
ANCHOR04	124	157	hidden
ANCHOR05	221	228	hidden
ANCHOR06	321	327	hidden
ANCHOR07	341	352	hidden
ANCHOR08	367	375	hidden
ANCHOR09	400	423	hidden
ANCHOR10	435	442	hidden
ANCHOR11	458	488	hidden
ANCHOR12	513	529	hidden
ANCHOR13	554	566	hidden
ANCHOR14	629	639	hidden
ANCHOR15	658	663	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
coiled_coil_region	3	30	0	INTRINSIC	visible\|OK
SMART:LysM	115	158	6.4e-08	SMART	visible\|OK
Pfam:LysM	116	158	9.3e-10	PFAM	hidden\|overlap
low_complexity_region	162	183	0	INTRINSIC	visible\|OK
Pfam:GRAM	197	282	7.5e-09	PFAM	visible\|OK
SMART:TLDc	780	942	4.3e-64	SMART	visible\|OK
Pfam:TLD	806	942	5.7e-41	PFAM	hidden\|overlap
low_complexity_region	892	905	0	INTRINSIC	hidden\|overlap