iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q15459|SF3A1_HUMAN Splicing factor 3A subunit 1 OS=Homo sapiens GN=SF3A1 PE=1 SV=1

{"length":"793","regions":[{
startStyle: "straight", endStyle: "straight",
start: 2, end: 27, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 2, end: 27}
},
{
startStyle: "curved", endStyle: "curved",
start: 50, end: 103, text: "SWAP", colour: "#ff8800",
"metadata":{ database: "SMART", type: "SWAP",
description: "SWAP", start: 50, end: 103}
},
{
startStyle: "straight", endStyle: "straight",
start: 118, end: 138, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 118, end: 138}
},
{
startStyle: "curved", endStyle: "curved",
start: 164, end: 217, text: "SWAP", colour: "#ff8800",
"metadata":{ database: "SMART", type: "SWAP",
description: "SWAP", start: 164, end: 217}
},
{
startStyle: "curved", endStyle: "curved",
start: 222, end: 472, text: "Pfam:PRP21_like_P", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:PRP21_like_P",
description: "Pfam:PRP21_like_P", start: 222, end: 472}
},
{
startStyle: "straight", endStyle: "straight",
start: 554, end: 562, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 554, end: 562}
},
{
startStyle: "straight", endStyle: "straight",
start: 571, end: 592, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 571, end: 592}
},
{
startStyle: "straight", endStyle: "straight",
start: 626, end: 675, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 626, end: 675}
},
{
startStyle: "curved", endStyle: "curved",
start: 715, end: 786, text: "UBQ", colour: "#ff8800",
"metadata":{ database: "SMART", type: "UBQ",
description: "UBQ", start: 715, end: 786}
},
{
startStyle: "straight", endStyle: "straight",
start: 148, end: 153, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:PEFEFI", start: 148, end: 153}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	148	153	PEFEFI	13 (7.9e-02)		2DT7_B	No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR01	1	8	hidden
ANCHOR02	36	71	hidden
ANCHOR03	76	100	hidden
ANCHOR04	271	287	hidden
ANCHOR05	303	330	hidden
ANCHOR06	342	363	hidden
ANCHOR07	380	439	hidden
ANCHOR08	455	467	hidden
ANCHOR09	473	485	hidden
ANCHOR10	502	542	hidden
ANCHOR11	565	573	hidden
ANCHOR12	588	595	hidden
ANCHOR13	605	611	hidden
ANCHOR14	685	699	hidden
ANCHOR15	723	733	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
low_complexity_region	2	27	0	INTRINSIC	visible\|OK
internal_repeat_1	38	101	6.2e-13	PROSPERO	hidden\|overlap
SMART:SWAP	50	103	5.0e-30	SMART	visible\|OK
Pfam:Surp	53	97	1.1e-25	PFAM	hidden\|overlap
low_complexity_region	118	138	0	INTRINSIC	visible\|OK
internal_repeat_1	148	215	6.2e-13	PROSPERO	hidden\|overlap
SMART:SWAP	164	217	3.2e-24	SMART	visible\|OK
Pfam:Surp	167	211	1.9e-21	PFAM	hidden\|overlap
Pfam:PRP21_like_P	222	472	7.6e-57	PFAM	visible\|OK
low_complexity_region	254	268	0	INTRINSIC	hidden\|overlap
low_complexity_region	319	341	0	INTRINSIC	hidden\|overlap
low_complexity_region	354	365	0	INTRINSIC	hidden\|overlap
low_complexity_region	369	384	0	INTRINSIC	hidden\|overlap
low_complexity_region	395	407	0	INTRINSIC	hidden\|overlap
low_complexity_region	554	562	0	INTRINSIC	visible\|OK
low_complexity_region	571	592	0	INTRINSIC	visible\|OK
low_complexity_region	626	675	0	INTRINSIC	visible\|OK
SMART:UBQ	715	786	1.9e-18	SMART	visible\|OK
Pfam:ubiquitin	717	788	3.9e-22	PFAM	hidden\|overlap