iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|O15040|TCPR2_HUMAN Tectonin beta-propeller repeat-containing protein 2 OS=Homo sapiens GN=TECPR2 PE=1 SV=4

{"length":"1411","regions":[{
startStyle: "curved", endStyle: "curved",
start: 21, end: 61, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 21, end: 61}
},
{
startStyle: "curved", endStyle: "curved",
start: 65, end: 105, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 65, end: 105}
},
{
startStyle: "curved", endStyle: "curved",
start: 113, end: 155, text: "WD40", colour: "#ff8800",
"metadata":{ database: "SMART", type: "WD40",
description: "WD40", start: 113, end: 155}
},
{
startStyle: "curved", endStyle: "curved",
start: 280, end: 314, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 280, end: 314}
},
{
startStyle: "curved", endStyle: "curved",
start: 316, end: 353, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 316, end: 353}
},
{
startStyle: "straight", endStyle: "straight",
start: 400, end: 420, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 400, end: 420}
},
{
startStyle: "straight", endStyle: "straight",
start: 457, end: 471, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 457, end: 471}
},
{
startStyle: "curved", endStyle: "curved",
start: 885, end: 918, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 885, end: 918}
},
{
startStyle: "curved", endStyle: "curved",
start: 926, end: 961, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 926, end: 961}
},
{
startStyle: "curved", endStyle: "curved",
start: 972, end: 1010, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 972, end: 1010}
},
{
startStyle: "curved", endStyle: "curved",
start: 1160, end: 1195, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 1160, end: 1195}
},
{
startStyle: "curved", endStyle: "curved",
start: 1203, end: 1242, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 1203, end: 1242}
},
{
startStyle: "curved", endStyle: "curved",
start: 1253, end: 1295, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 1253, end: 1295}
},
{
startStyle: "curved", endStyle: "curved",
start: 1304, end: 1338, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 1304, end: 1338}
},
{
startStyle: "curved", endStyle: "curved",
start: 1347, end: 1381, text: "TECPR", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TECPR",
description: "TECPR", start: 1347, end: 1381}
},
{
startStyle: "straight", endStyle: "straight",
start: 45, end: 50, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:GDYIAV", start: 45, end: 50}
},
{
startStyle: "straight", endStyle: "straight",
start: 102, end: 107, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:AVFQLV", start: 102, end: 107}
},
{
startStyle: "straight", endStyle: "straight",
start: 894, end: 899, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:AVFVAL", start: 894, end: 899}
},
{
startStyle: "straight", endStyle: "straight",
start: 1406, end: 1411, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:DEWEVI", start: 1406, end: 1411}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Anchor
xLIR	45	50	GDYIAV	14 (5.7e-02)	No
xLIR	102	107	AVFQLV	5 (1.0e+00)	No
xLIR	894	899	AVFVAL	7 (5.3e-01)	No
xLIR	1406	1411	DEWEVI	23 (3.2e-03)	No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR01	395	402	hidden
ANCHOR02	418	430	hidden
ANCHOR03	439	463	hidden
ANCHOR04	480	492	hidden
ANCHOR05	499	522	hidden
ANCHOR06	529	537	hidden
ANCHOR07	543	621	hidden
ANCHOR08	625	667	hidden
ANCHOR09	681	703	hidden
ANCHOR10	711	737	hidden
ANCHOR11	756	761	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
SMART:WD40	21	61	76.3738319435967	SMART	visible\|OK
SMART:WD40	65	105	22.0946589409575	SMART	visible\|OK
SMART:WD40	113	155	0.110317930298183	SMART	visible\|OK
SMART:TECPR	280	314	3.19185562032637	SMART	visible\|OK
SMART:TECPR	316	353	0.624967345028068	SMART	visible\|OK
low_complexity_region	400	420	0	INTRINSIC	visible\|OK
low_complexity_region	457	471	0	INTRINSIC	visible\|OK
internal_repeat_1	725	959	7.6e-06	PROSPERO	hidden\|overlap
internal_repeat_2	846	1018	7.8e-05	PROSPERO	hidden\|overlap
SMART:TECPR	885	918	1.1662285050339	SMART	visible\|OK
SMART:TECPR	926	961	0.00122064151993989	SMART	visible\|OK
Pfam:Hyd_WA	945	976	2.9e-11	PFAM	hidden\|overlap
SMART:TECPR	972	1010	9.0e-07	SMART	visible\|OK
Pfam:Hyd_WA	994	1027	1.9e-11	PFAM	hidden\|overlap
internal_repeat_2	1122	1303	7.8e-05	PROSPERO	hidden\|overlap
internal_repeat_1	1148	1379	7.6e-06	PROSPERO	hidden\|overlap
SMART:TECPR	1160	1195	0.00130825118794192	SMART	visible\|OK
Pfam:Hyd_WA	1179	1209	1.1e-08	PFAM	hidden\|overlap
SMART:TECPR	1203	1242	1.3e-08	SMART	visible\|OK
Pfam:Hyd_WA	1226	1259	2.0e-10	PFAM	hidden\|overlap
SMART:TECPR	1253	1295	2.8e-07	SMART	visible\|OK
Pfam:Hyd_WA	1279	1310	5.8e-11	PFAM	hidden\|overlap
SMART:TECPR	1304	1338	0.000132828770995243	SMART	visible\|OK
Pfam:Hyd_WA	1322	1353	2.0e-10	PFAM	hidden\|overlap
SMART:TECPR	1347	1381	0.00053131508278307	SMART	visible\|OK