iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q9GZZ9|UBA5_HUMAN Ubiquitin-like modifier-activating enzyme 5 OS=Homo sapiens GN=UBA5 PE=1 SV=1

{"length":"404","regions":[{
startStyle: "curved", endStyle: "curved",
start: 72, end: 218, text: "Pfam:ThiF", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:ThiF",
description: "Pfam:ThiF", start: 72, end: 218}
},
{
startStyle: "straight", endStyle: "straight",
start: 326, end: 340, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 326, end: 340}
},
{
startStyle: "straight", endStyle: "straight",
start: 344, end: 354, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 344, end: 354}
},
{
startStyle: "straight", endStyle: "straight",
start: 66, end: 71, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:SDYEKI", start: 66, end: 71}
},
{
startStyle: "straight", endStyle: "straight",
start: 103, end: 108, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:FDYDKV", start: 103, end: 108}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	66	71	SDYEKI	17 (2.2e-02)		3H8V_A,B 3GUC_A,B	No
xLIR	103	108	FDYDKV	16 (3.0e-02)		[+/-] 3H8V_A,B 3GUC_A,B 3H8V_A,B 3GUC_A,B 1Y8R_B,E 1Y8Q_B,D 3CMM_A,C 4II3_A,C 4II2_A 3H9Q_A,B,C,D 3H9J_A,B,C,D 3H9G_A,B,C,D 3H5R_A,B,C,D 3H5N_A,B,C,D 1ZKM_A,B,C,D 3H5A_A,B,C,D 1ZFN_A,B,C,D 1ZUD_1,3 1JWB_B 1JWA_B 1JW9_B 3KYD_B 3KYC_B	No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR1	366	374	hidden
ANCHOR2	393	404	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
transmembrane_domain	71	93	0	INTRINSIC	hidden\|overlap
Pfam:ThiF	72	218	5.5e-34	PFAM	visible\|OK
low_complexity_region	79	87	0	INTRINSIC	hidden\|overlap
low_complexity_region	326	340	0	INTRINSIC	visible\|OK
low_complexity_region	344	354	0	INTRINSIC	visible\|OK