iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q2TAZ0|ATG2A_HUMAN Autophagy-related protein 2 homolog A OS=Homo sapiens GN=ATG2A PE=1 SV=3

{"length":"1938","regions":[{
startStyle: "straight", endStyle: "straight",
start: 140, end: 154, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 140, end: 154}
},
{
startStyle: "straight", endStyle: "straight",
start: 237, end: 251, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 237, end: 251}
},
{
startStyle: "straight", endStyle: "straight",
start: 284, end: 306, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 284, end: 306}
},
{
startStyle: "straight", endStyle: "straight",
start: 346, end: 367, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 346, end: 367}
},
{
startStyle: "straight", endStyle: "straight",
start: 373, end: 396, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 373, end: 396}
},
{
startStyle: "straight", endStyle: "straight",
start: 426, end: 441, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 426, end: 441}
},
{
startStyle: "straight", endStyle: "straight",
start: 502, end: 512, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 502, end: 512}
},
{
startStyle: "straight", endStyle: "straight",
start: 565, end: 576, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 565, end: 576}
},
{
startStyle: "straight", endStyle: "straight",
start: 597, end: 610, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 597, end: 610}
},
{
startStyle: "straight", endStyle: "straight",
start: 846, end: 859, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 846, end: 859}
},
{
startStyle: "straight", endStyle: "straight",
start: 886, end: 903, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 886, end: 903}
},
{
startStyle: "straight", endStyle: "straight",
start: 1174, end: 1192, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 1174, end: 1192}
},
{
startStyle: "straight", endStyle: "straight",
start: 1317, end: 1339, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 1317, end: 1339}
},
{
startStyle: "straight", endStyle: "straight",
start: 1342, end: 1355, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 1342, end: 1355}
},
{
startStyle: "straight", endStyle: "straight",
start: 1445, end: 1464, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 1445, end: 1464}
},
{
startStyle: "straight", endStyle: "straight",
start: 1785, end: 1797, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 1785, end: 1797}
},
{
startStyle: "curved", endStyle: "curved",
start: 1835, end: 1932, text: "Pfam:ATG_C", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:ATG_C",
description: "Pfam:ATG_C", start: 1835, end: 1932}
},
{
startStyle: "straight", endStyle: "straight",
start: 534, end: 539, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:PEYTEI", start: 534, end: 539}
},
{
startStyle: "straight", endStyle: "straight",
start: 828, end: 833, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:EVYESI", start: 828, end: 833}
},
{
startStyle: "straight", endStyle: "straight",
start: 1090, end: 1095, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:LEFLDV", start: 1090, end: 1095}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Anchor
xLIR	534	539	PEYTEI	13 (7.9e-02)	No
xLIR	828	833	EVYESI	9 (2.8e-01)	No
xLIR	1090	1095	LEFLDV	9 (2.8e-01)	No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR01	123	133	hidden
ANCHOR02	155	173	hidden
ANCHOR03	222	235	hidden
ANCHOR04	254	265	hidden
ANCHOR05	362	371	hidden
ANCHOR06	426	439	hidden
ANCHOR07	603	608	hidden
ANCHOR08	694	705	hidden
ANCHOR09	715	720	hidden
ANCHOR10	730	739	hidden
ANCHOR11	979	985	hidden
ANCHOR12	1272	1321	hidden
ANCHOR13	1332	1342	hidden
ANCHOR14	1355	1371	hidden
ANCHOR15	1383	1408	hidden
ANCHOR16	1419	1434	hidden
ANCHOR17	1478	1495	hidden
ANCHOR18	1519	1524	hidden
ANCHOR19	1576	1583	hidden
ANCHOR20	1897	1905	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
low_complexity_region	140	154	0	INTRINSIC	visible\|OK
low_complexity_region	237	251	0	INTRINSIC	visible\|OK
low_complexity_region	284	306	0	INTRINSIC	visible\|OK
low_complexity_region	346	367	0	INTRINSIC	visible\|OK
low_complexity_region	373	396	0	INTRINSIC	visible\|OK
low_complexity_region	426	441	0	INTRINSIC	visible\|OK
low_complexity_region	502	512	0	INTRINSIC	visible\|OK
low_complexity_region	565	576	0	INTRINSIC	visible\|OK
low_complexity_region	597	610	0	INTRINSIC	visible\|OK
low_complexity_region	846	859	0	INTRINSIC	visible\|OK
low_complexity_region	886	903	0	INTRINSIC	visible\|OK
low_complexity_region	1174	1192	0	INTRINSIC	visible\|OK
low_complexity_region	1317	1339	0	INTRINSIC	visible\|OK
low_complexity_region	1342	1355	0	INTRINSIC	visible\|OK
low_complexity_region	1445	1464	0	INTRINSIC	visible\|OK
low_complexity_region	1785	1797	0	INTRINSIC	visible\|OK
Pfam:ATG_C	1835	1932	2.9e-39	PFAM	visible\|OK