iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|P40458|ATG32_YEAST Autophagy-related protein 32 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG32 PE=1 SV=1

{"length":"529","regions":[{
startStyle: "straight", endStyle: "straight",
start: 10, end: 24, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 10, end: 24}
},
{
startStyle: "straight", endStyle: "straight",
start: 120, end: 127, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 120, end: 127}
},
{
startStyle: "straight", endStyle: "straight",
start: 174, end: 188, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 174, end: 188}
},
{
startStyle: "straight", endStyle: "straight",
start: 307, end: 318, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 307, end: 318}
},
{
startStyle: "straight", endStyle: "straight",
start: 340, end: 350, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 340, end: 350}
},
{
startStyle: "straight", endStyle: "straight",
start: 362, end: 385, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 362, end: 385}
},
{
startStyle: "straight", endStyle: "straight",
start: 389, end: 411, text: "TM", colour: "#F00",
"metadata":{ database: "INTRINSIC", type: "transmembrane_domain",
description: "TM", start: 389, end: 411}
},
{
startStyle: "straight", endStyle: "straight",
start: 428, end: 440, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 428, end: 440}
},
{
startStyle: "straight", endStyle: "straight",
start: 84, end: 89, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:GSWQAI", start: 84, end: 89}
},
{
startStyle: "straight", endStyle: "straight",
start: 235, end: 240, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:KEYQSL", start: 235, end: 240}
},
{
startStyle: "straight", endStyle: "straight",
start: 524, end: 529, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:LGYILL", start: 524, end: 529}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	Anchor
xLIR	84	89	GSWQAI	17 (2.2e-02)	ATG32_YEAST 84-89 (6)	Yes
xLIR	235	240	KEYQSL	12 (1.1e-01)		No
xLIR	524	529	LGYILL	10 (2.0e-01)		No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR1	1	9	hidden
ANCHOR2	26	32	hidden
ANCHOR3	40	54	hidden
ANCHOR4	65	72	hidden
ANCHOR5	84	102	hidden
ANCHOR6	126	139	hidden
ANCHOR7	153	164	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	TYPE	STATUS
low_complexity_region	10	24	INTRINSIC	visible\|OK
low_complexity_region	120	127	INTRINSIC	visible\|OK
low_complexity_region	174	188	INTRINSIC	visible\|OK
low_complexity_region	307	318	INTRINSIC	visible\|OK
low_complexity_region	340	350	INTRINSIC	visible\|OK
low_complexity_region	362	385	INTRINSIC	visible\|OK
transmembrane_domain	389	411	INTRINSIC	visible\|OK
low_complexity_region	428	440	INTRINSIC	visible\|OK