iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|P40344|ATG3_YEAST Autophagy-related protein 3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ATG3 PE=1 SV=1

{"length":"310","regions":[{
startStyle: "curved", endStyle: "curved",
start: 1, end: 154, text: "Pfam:Autophagy_N", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:Autophagy_N",
description: "Pfam:Autophagy_N", start: 1, end: 154}
},
{
startStyle: "curved", endStyle: "curved",
start: 172, end: 235, text: "Pfam:Autophagy_act_C", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:Autophagy_act_C",
description: "Pfam:Autophagy_act_C", start: 172, end: 235}
},
{
startStyle: "straight", endStyle: "straight",
start: 243, end: 265, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 243, end: 265}
},
{
startStyle: "curved", endStyle: "curved",
start: 283, end: 307, text: "Pfam:Autophagy_Cterm", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:Autophagy_Cterm",
description: "Pfam:Autophagy_Cterm", start: 283, end: 307}
},
{
startStyle: "straight", endStyle: "straight",
start: 268, end: 273, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:GDWEDL", start: 268, end: 273}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	268	273	GDWEDL	22 (4.4e-03)	Atg3_YEAST 268-273 (6)	[+/-] 2DYT_A 4GSL_C,D 2DYT_A 4GSL_C,D 3VX8_B,C	No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR1	105	111	hidden
ANCHOR2	129	139	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
Pfam:Autophagy_N	1	154	5.5e-48	PFAM	visible\|OK
low_complexity_region	140	152	0	INTRINSIC	hidden\|overlap
Pfam:Autophagy_act_C	172	235	5.8e-24	PFAM	visible\|OK
low_complexity_region	243	265	0	INTRINSIC	visible\|OK
Pfam:Autophagy_Cterm	283	307	4.4e-16	PFAM	visible\|OK