iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>tr|Q9SB64|Q9SB64_ARATH At4g24690 OS=Arabidopsis thaliana GN=F22K18.110 PE=2 SV=1

{"length":"704","regions":[{
startStyle: "curved", endStyle: "curved",
start: 7, end: 92, text: "PB1", colour: "#00ff00",
"metadata":{ database: "SMART", type: "PB1",
description: "PB1", start: 7, end: 92}
},
{
startStyle: "curved", endStyle: "curved",
start: 285, end: 330, text: "ZnF_ZZ", colour: "#00ff00",
"metadata":{ database: "SMART", type: "ZnF_ZZ",
description: "ZnF_ZZ", start: 285, end: 330}
},
{
startStyle: "straight", endStyle: "straight",
start: 572, end: 579, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 572, end: 579}
},
{
startStyle: "curved", endStyle: "curved",
start: 660, end: 697, text: "Pfam:UBA", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:UBA",
description: "Pfam:UBA", start: 660, end: 697}
},
{
startStyle: "straight", endStyle: "straight",
start: 479, end: 484, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:RVWVLI", start: 479, end: 484}
},
{
startStyle: "straight", endStyle: "straight",
start: 659, end: 664, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:SEWDPI", start: 659, end: 664}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	479	484	RVWVLI	15 (4.2e-02)			No
xLIR	659	664	SEWDPI	20 (8.4e-03)	Q9SB64_ARATH 659-664 (6)		No

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR01	121	129	hidden
ANCHOR02	137	146	hidden
ANCHOR03	154	170	hidden
ANCHOR04	188	198	hidden
ANCHOR05	237	242	hidden
ANCHOR06	516	523	hidden
ANCHOR07	552	566	hidden
ANCHOR08	578	595	hidden
ANCHOR09	621	626	hidden
ANCHOR10	654	659	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
SMART:PB1	7	92	5.2e-14	SMART	visible\|OK
Pfam:PB1	7	92	4.6e-12	PFAM	hidden\|overlap
SMART:ZnF_ZZ	285	330	3.2e-05	SMART	visible\|OK
Pfam:ZZ	285	328	2.4e-11	PFAM	hidden\|overlap
low_complexity_region	572	579	0	INTRINSIC	visible\|OK
Pfam:UBA	660	697	7.4e-08	PFAM	visible\|OK