iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q8TDY2|RBCC1_HUMAN RB1-inducible coiled-coil protein 1 OS=Homo sapiens GN=RB1CC1 PE=1 SV=3

{"length":"1594","regions":[{
startStyle: "straight", endStyle: "straight",
start: 10, end: 24, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 10, end: 24}
},
{
startStyle: "straight", endStyle: "straight",
start: 472, end: 483, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 472, end: 483}
},
{
startStyle: "straight", endStyle: "straight",
start: 641, end: 654, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 641, end: 654}
},
{
startStyle: "straight", endStyle: "straight",
start: 663, end: 675, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 663, end: 675}
},
{
startStyle: "straight", endStyle: "straight",
start: 865, end: 1232, text: "CC", colour: "#9cff00",
"metadata":{ database: "INTRINSIC", type: "coiled_coil_region",
description: "CC", start: 865, end: 1232}
},
{
startStyle: "straight", endStyle: "straight",
start: 1246, end: 1268, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 1246, end: 1268}
},
{
startStyle: "straight", endStyle: "straight",
start: 1285, end: 1397, text: "CC", colour: "#9cff00",
"metadata":{ database: "INTRINSIC", type: "coiled_coil_region",
description: "CC", start: 1285, end: 1397}
},
{
startStyle: "curved", endStyle: "curved",
start: 1451, end: 1590, text: "Pfam:ATG11", colour: "#ff8800",
"metadata":{ database: "PFAM", type: "Pfam:ATG11",
description: "Pfam:ATG11", start: 1451, end: 1590}
},
{
startStyle: "straight", endStyle: "straight",
start: 700, end: 705, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:FDFETI", start: 700, end: 705}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	700	705	FDFETI	17 (2.2e-02)	RBCC1_HUMAN 700-705 (6)		Yes

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR1	254	260	hidden
ANCHOR2	301	311	hidden
ANCHOR3	676	705	hidden
ANCHOR4	714	725	hidden
ANCHOR5	731	742	hidden
ANCHOR6	761	770	hidden
ANCHOR7	1346	1353	hidden
ANCHOR8	1394	1417	hidden
ANCHOR9	1441	1446	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
low_complexity_region	10	24	0	INTRINSIC	visible\|OK
low_complexity_region	472	483	0	INTRINSIC	visible\|OK
low_complexity_region	641	654	0	INTRINSIC	visible\|OK
low_complexity_region	663	675	0	INTRINSIC	visible\|OK
coiled_coil_region	865	1232	0	INTRINSIC	visible\|OK
low_complexity_region	881	899	0	INTRINSIC	hidden\|overlap
low_complexity_region	1021	1029	0	INTRINSIC	hidden\|overlap
low_complexity_region	1037	1049	0	INTRINSIC	hidden\|overlap
low_complexity_region	1059	1070	0	INTRINSIC	hidden\|overlap
low_complexity_region	1246	1268	0	INTRINSIC	visible\|OK
coiled_coil_region	1285	1397	0	INTRINSIC	visible\|OK
low_complexity_region	1290	1318	0	INTRINSIC	hidden\|overlap
low_complexity_region	1377	1396	0	INTRINSIC	hidden\|overlap
coiled_coil_region	1449	1486	0	INTRINSIC	hidden\|overlap
Pfam:ATG11	1451	1590	2.4e-30	PFAM	visible\|OK
low_complexity_region	1482	1493	0	INTRINSIC	hidden\|overlap