iLIR v1.0 WWW Server: RESULTS PAGE

Submitted 1 sequence
>sp|Q9UPU7|TBD2B_HUMAN TBC1 domain family member 2B OS=Homo sapiens GN=TBC1D2B PE=1 SV=2

{"length":"963","regions":[{
startStyle: "curved", endStyle: "curved",
start: 35, end: 141, text: "PH", colour: "#ff8800",
"metadata":{ database: "SMART", type: "PH",
description: "PH", start: 35, end: 141}
},
{
startStyle: "straight", endStyle: "straight",
start: 316, end: 332, text: "LCR", colour: "#86bcff",
"metadata":{ database: "INTRINSIC", type: "low_complexity_region",
description: "LCR", start: 316, end: 332}
},
{
startStyle: "straight", endStyle: "straight",
start: 335, end: 374, text: "CC", colour: "#9cff00",
"metadata":{ database: "INTRINSIC", type: "coiled_coil_region",
description: "CC", start: 335, end: 374}
},
{
startStyle: "straight", endStyle: "straight",
start: 403, end: 449, text: "CC", colour: "#9cff00",
"metadata":{ database: "INTRINSIC", type: "coiled_coil_region",
description: "CC", start: 403, end: 449}
},
{
startStyle: "straight", endStyle: "straight",
start: 479, end: 535, text: "CC", colour: "#9cff00",
"metadata":{ database: "INTRINSIC", type: "coiled_coil_region",
description: "CC", start: 479, end: 535}
},
{
startStyle: "curved", endStyle: "curved",
start: 659, end: 879, text: "TBC", colour: "#ff8800",
"metadata":{ database: "SMART", type: "TBC",
description: "TBC", start: 659, end: 879}
},
{
startStyle: "straight", endStyle: "straight",
start: 252, end: 257, text: "xLIR", colour: "#ff00ff",
lineStyle: "bold", v_align: "top", label: "xLIR",
"metadata":{ database: "xLIR web server", type: "xLIR-motif",
description: "xLIR-motif:EEWELL", start: 252, end: 257}
},
]
}

xLIR motifs are displayed as magenta rectangles in the domain architecture graphic

MOTIF	START	END	LIR sequence	PSSM score	Similar LIRs	In PDB	Anchor
xLIR	252	257	EEWELL	20 (8.4e-03)	STBD1_HUMAN 201-206 (4) TBCD5_HUMAN 57-62 (4)		Yes

[+/-] Show/Hide Detailed ANCHOR results

DOMAIN	START	END	STATUS
ANCHOR1	141	147	hidden
ANCHOR2	186	196	hidden
ANCHOR3	214	227	hidden
ANCHOR4	246	256	hidden
ANCHOR5	285	313	hidden
ANCHOR6	378	387	hidden
ANCHOR7	440	445	hidden

[+/-] Show/Hide Detailed SMART results

DOMAIN	START	END	E-VALUE	TYPE	STATUS
low_complexity_region	2	36	0	INTRINSIC	hidden\|overlap
SMART:PH	35	141	8.7e-09	SMART	visible\|OK
low_complexity_region	316	332	0	INTRINSIC	visible\|OK
coiled_coil_region	335	374	0	INTRINSIC	visible\|OK
low_complexity_region	338	360	0	INTRINSIC	hidden\|overlap
coiled_coil_region	403	449	0	INTRINSIC	visible\|OK
low_complexity_region	465	480	0	INTRINSIC	hidden\|overlap
coiled_coil_region	479	535	0	INTRINSIC	visible\|OK
SMART:TBC	659	879	2.0e-59	SMART	visible\|OK
Pfam:TBC	665	876	5.6e-58	PFAM	hidden\|overlap
low_complexity_region	833	846	0	INTRINSIC	hidden\|overlap