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LIR Motif Search
LIR-containing proteins in
Retroviridae
>> EXPORT DATA
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S.No.
Uniprot ID
Start
End
LIR sequence
PSSM Score
▲
▼
Pattern
LIR in Anchor
Description
Species
151
P35955
131
136
QLYPNL
0
WxxL
No
Gag polyprotein
Maedi visna virus (strain KV1772)
152
P03352
131
136
QLYPNL
0
WxxL
No
Gag polyprotein
Maedi visna virus (strain 1514)
153
P04048
111
116
CCYGDL
0
WxxL
No
Tyrosine-protein kinase transforming protein kit
Feline sarcoma virus (strain Hardy-Zuckerman 4)
154
P00545
697
702
CCYGDL
0
WxxL
No
Tyrosine-protein kinase transforming protein fms
Feline sarcoma virus (strain McDonough)
155
P23091
291
296
CRFKRV
0
WxxL
Yes
Transforming protein Maf
Avian musculoaponeurotic fibrosarcoma virus AS42
156
P20867
151
156
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
157
P05857
141
146
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate SC)
158
Q02840
149
154
IRYPRV
0
WxxL
No
Protein Nef
Simian immunodeficiency virus agm.grivet (isolate AGM gr-1)
159
O70903
142
147
WCFKLV
0
WxxL
Yes
Protein Nef
Human immunodeficiency virus type 1 group M subtype H (isolate 90CF056)
160
Q9QBZ3
136
141
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype F2 (isolate MP255)
161
Q9WC70
139
144
WCFKLV
0
WxxL
Yes
Protein Nef
Human immunodeficiency virus type 1 group M subtype J (isolate SE9173)
162
P35959
150
155
WCFKLV
0
WxxL
Yes
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate YU-2)
163
Q9IDV1
142
147
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group N (isolate YBF106)
164
O12165
141
146
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025)
165
P04603
144
149
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype A (isolate MAL)
166
P20886
146
151
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate OYI)
167
Q9Q713
142
147
WCFKLV
0
WxxL
Yes
Protein Nef
Human immunodeficiency virus type 1 group M subtype H (isolate VI991)
168
P03407
145
150
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2)
169
P12479
153
158
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate BRVA)
170
P19546
143
148
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate SF162)
171
P05858
143
148
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate RF/HAT3)
172
P17664
141
146
WCFKLV
0
WxxL
No
Protein Nef
Simian immunodeficiency virus (isolate CPZ GAB1)
173
Q1A242
141
146
WCFKLV
0
WxxL
No
Protein Nef
Simian immunodeficiency virus (isolate EK505)
174
Q1A260
141
146
WCFKLV
0
WxxL
No
Protein Nef
Simian immunodeficiency virus (isolate MB66)
175
Q75009
142
147
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype C (isolate ETH2220)
176
P19545
140
145
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate SF33)
177
P05859
141
146
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype A (isolate Z321)
178
P05856
143
148
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype B (isolate MN)
179
O89945
142
147
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype G (isolate SE6165)
180
Q9QSQ6
141
146
WCFKLV
0
WxxL
Yes
Protein Nef
Human immunodeficiency virus type 1 group M subtype F1 (isolate VI850)
181
O91087
147
152
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group N (isolate YBF30)
182
Q8AIH4
137
142
WLFKLV
0
WxxL
No
Protein Nef
Simian immunodeficiency virus (isolate TAN1)
183
O89293
144
149
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype F1 (isolate 93BR020)
184
O41804
142
147
WCFKLV
0
WxxL
No
Protein Nef
Human immunodeficiency virus type 1 group M subtype G (isolate 92NG083)
185
Q9QBY9
136
141
WCFKLV
0
WxxL
Yes
Protein Nef
Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257)
186
Q0R5R2
970
975
HRFHNL
0
WxxL
No
Gag-Pro-Pol polyprotein
Human T-cell leukemia virus 3 (strain 2026ND)
187
O12158
852
857
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 1 group M subtype C (isolate 92BR025)
188
Q9QBY3
851
856
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 1 group M subtype K (isolate 96CM-MP535)
189
Q9QBZ1
855
860
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 1 group M subtype F2 (isolate MP257)
190
Q9WC63
853
858
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 1 group M subtype J (isolate SE9173)
191
Q9Q720
857
862
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 1 group M subtype H (isolate VI991)
192
Q04095
673
678
LLFPAV
0
WxxL
No
Gag-Pro-Pol polyprotein
Avian leukosis virus RSA
193
Q04095
790
795
VPFGAV
0
WxxL
No
Gag-Pro-Pol polyprotein
Avian leukosis virus RSA
194
Q1A249
865
870
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Simian immunodeficiency virus (isolate EK505)
195
P22382
866
871
QLYPGI
0
WxxL
No
Gag-Pol polyprotein
Simian immunodeficiency virus (isolate GB1)
196
P17757
879
884
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 2 subtype A (isolate D194)
197
P18042
881
886
QIYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 2 subtype A (isolate Ghana-1)
198
P04584
881
886
QLYPGI
0
WxxL
No
Gag-Pol polyprotein
Human immunodeficiency virus type 2 subtype A (isolate ROD)
199
P11368
92
97
NLFGPV
0
WxxL
No
Putative Pol polyprotein
Mouse intracisternal a-particle MIA14
200
O92956
673
678
LLFPAV
0
WxxL
No
Gag-Pro-Pol polyprotein
Rous sarcoma virus (strain Schmidt-Ruppin B)
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Ioannis Nezis lab
|
University of Warwick